Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTIQQLVKHVSVREF-KNERLSDETKQHLLTAARSASSSHFVQSFSILEITDEKLRKELAEI--TNSASYVNQTGTFYVFVGDLYRQSKLLLENNRTLD--GLRNMESLLVSVIDATIAAQNMVIAAESLDLGICYIGGIRNDIGKVAELLNL-PPFTIPVFGLTVGVP--EYKNQVKPRLLLENQVGENQYPHEQFTDLKAYEELTKDYYALREKNQHQTSWGDKNVEFFEEIRRPEIASFLKKQGFTLD
1BKJ Chain:A ((2-240))
-NNTIETILAHRSIRKFTA-VPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAG--NQAYVESAAEFLVFCIDYQRHATINP-------DVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLG-LPENSAVLFGMCLGHPDQ--NPEVKPRLPAHVVVHENQYQELNLDDIQSYDQTMQAYY---------STWSQEVTGKLAGESRPHILPYLNSKGLAKR
General information:
TITO was launched using:
RESULT:
Template:
1BKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105980 for 1529 contacts (-69.3/contact) +
2D Compatibility (PS) -24220 + (NN) -10781 + (LL) 1460
1D Compatibility (HY) -15600 + (ID) 3950
Total energy: -159071.0 ( -104.04 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1BKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BKJ-query.scw
PDB file :
Tito_Scwrl_1BKJ.pdb
: