Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNDMYNNIRLSVIQLIDSKKENLKENNIKLTIIKNEKDGY------------------VVELD---------------NDKCMAEIVVEEPTYTPYRYISFEVVSLMDGKVKIIYS--WYDDETSQWSDIEKELNKGIQFLNNFKTMEQ
2H3K Chain:A ((1-144))
ADESLKDAIKDPALENKEHDIGPREQVNFQLLDKNNETQYYHFFSIKDPADVYYTKKKAEVELDINTASTWKKFEVYENNQKLPVRLVSYSPVPEDHAYIRFPV-SDGTQELKIVSSTQIDDGEETNYDYTKLVFAKPIYNDPSL-----
General information:
TITO was launched using:
RESULT:
Template:
2H3K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9800 for 571 contacts (-17.2/contact) +
2D Compatibility (PS) -11260 + (NN) 1677 + (LL) 740
1D Compatibility (HY) -800 + (ID) 1300
Total energy: -20743.0 ( -36.33 by residue)
QMean score : 0.194
(partial model without unconserved sides chains):
PDB file :
Tito_2H3K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H3K-query.scw
PDB file :
Tito_Scwrl_2H3K.pdb
: