Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEKTIMERRSIKKANDEPISRETVNTILEQAAYAPFHSKVEPWNVYVLHTLAEKERYIEKIIEFNEREQGVSFSEAEIADLKAGYAKKIITPPYLLIVTTNIIGHGK--KDFESIGATSAFIQNIQLLGWEAGIGMIWRSNRFIFDAKFADDLGIPAEQKIVGTLHLTSLAEVPE---AKPRRPLNEWVKNLADL
3GE5 Chain:A ((29-195))
LIEDFFRTRRSVRKFIDRPVEEEKLMAILEAGRIAPSAHNYQPWHFLVVREEEGRKRLAPCS----------------------QQ-PWFPGAPIYIITLGDHQRAWKRGAGDSVDIDTSIAMTYMMLEAHSLGLGCTWVCA--FDQALCSEIFDIPSHMTPVSILALGYGDPTVPPREAFNRKTIEEVVSF----
General information:
TITO was launched using:
RESULT:
Template:
3GE5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80741 for 1169 contacts (-69.1/contact) +
2D Compatibility (PS) -17091 + (NN) -5712 + (LL) 2688
1D Compatibility (HY) -6800 + (ID) 1850
Total energy: -109506.0 ( -93.67 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_3GE5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GE5-query.scw
PDB file :
Tito_Scwrl_3GE5.pdb
: