Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MINQVYRLVS-ERQFEEANIEEA-LTEDVVVVRPTYLSICAADQRY-YTGSRGKEMLSKKLPMALIHEGVGQVTYDATG--EFEIGTKVVMIPNTPTEDD---PVIAENYRRSSLF---------------------RSSGYDGLMQENVFMRRDRVVRLPENMDMEVAA-YSELISVAFHAITRFKQKANANQSVFGVWGDGNLGFITCLLLKTIYPESKVIIFGKTQYKLDFFS--FVDEAHLVDE----------IPEGLVIDNAFECAGGKGSQYAVEQIID-LIKPEGTISLLGVSENP-IEFNSRMVLEKGLTVFGSSRSG---KEDFQNTVNFLSENERAVEYLSSLIGQRKVVRNLQDIIEAFETDLRNPFGKTVMEWKV |
1CDO Chain:A ((7-374)) | IKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKH-----KDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAK--VEPGSTCAVFGLGAVGLAAVMGCHS-AGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLVGWTDLHDVATRP-IQLIAGRTWKGSMFGGFKGKDGVPKMVKAYL-DKKV--KLDEFITHRMP---LESVNDAIDLMKHGKCIRTVLSL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177228 for 2792 contacts (-63.5/contact) +
2D Compatibility (PS) -34577 + (NN) -10212 + (LL) 1624
1D Compatibility (HY) -4000 + (ID) 2650
Total energy: -227043.0 ( -81.32 by residue)
QMean score : 0.424
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