Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VAVEKITMPKLGESVTEGTISSWLVKPGDTVEKYDAIAEVLTDKVTAEIPSSFSGTIKEILAEEDETLEVGEVICTIETEEASSSEPVVEAEQTEPKTPEKQETKQVKLAEAPASGRFSPAVLRIAGENNIDLSTVEGTGKGGRITRKDLLQVIENGPVAPKREEVKSAPQEKEATPNPVRSAAGDREIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNTVKD-SFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTW--AGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDM-IAVRDMVNLCLSIDHRILDGLLAGKFLQAIKAKVEKISKENTALY |
| 2II3 Chain:F ((31-252)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRTEPVKGFHKAMVKTMSAA-LKIPHFGYCDEVDLTELVKLREELKPIAFAR--GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLE---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2II3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -140122 for 1668 contacts (-84.0/contact) +
2D Compatibility (PS) -24760 + (NN) -14794 + (LL) 12788
1D Compatibility (HY) -14000 + (ID) 3900
Total energy: -184788.0 ( -110.78 by residue)
QMean score : 0.451
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