Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VENTIVIKLGGVA--SDNLTEGFFRQITEWQAANKKIVLVHGGGHYITKMMEALAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNASDTGLLEADRLSDT-DLGLVGKITKVKTNLIEQLLSENIITVIAPLGINSEHDWLNVNADTAACEVASALHAEALYLLTDVPGV----KNGSEIIGEIATAEIEKLQSTGVIKGGMIPKLASAAFAAENGVGQVIITDSLNNSGTKIKNKVAIG
4USJ Chain:B ((58-295))
---TIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIID----------------
General information:
TITO was launched using:
RESULT:
Template:
4USJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172260 for 1862 contacts (-92.5/contact) +
2D Compatibility (PS) -25563 + (NN) -9198 + (LL) 740
1D Compatibility (HY) -22000 + (ID) 4150
Total energy: -232431.0 ( -124.83 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_4USJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4USJ-query.scw
PDB file :
Tito_Scwrl_4USJ.pdb
: