Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MELIKGNIASPKGFYADGKHAGLKRK-RNDIGWIYSEVPANAAAVYTMNQMQAAPIFVTKDSFQSNAKLQAIIVNSGNANACTGNQGMLDALAMRAQTAEKLEIPLDSVAVASTGIIGDMLPMDKINAGIEMLEKQTG-NA-ADFEEAILTTDTFQKQISFQTEIGGRKVTMSGVAKGSGMIHPNMATMLAFITTDAAIPAELLQKLLKIKVDKTFNQITVDGDTSTNDMVVVMANGCAENPMLQEGTADFAKFADMFQAVTEHLAKSIARDGEGATKLIEVQVNGATKTEDARMIAKKIVSSSLVKTAAFGGDGNWGRIICAIGYSG--GRFAPDNITIKIGGIEILNHSSQTIY---NQQALDAYLEEEHIIIEVDLHIGLESGTAWGCDLSYEYVKINACYRT |
| 1VZ6 Chain:A ((8-390)) | ---------TPRGFVVHTAPVGLADDGRDDFTVLASTAPATVSAVFTRSRFAGPSVVLCREAVAD-GQARGVVVLARNANVATGLEGEENAREVREAVARALGLPEGEMLIASTGVIGRQYPMESIREHLKTLEWPAGEGGFDRAARAIMTTDTRPKEVRVSVG----GATLVGIAKGVGMLEPDMATLLTFFATDARLDPAEQDRLFRRVMDRTFNAVSIDTDTSTSDTAVLFANGLAGEV-------DAGEFEEALHTAALALVKDIASDGEGAAKLIEVQVTGARDDAQAKRVGKTVVNSPLVKTAVHGCDPNWGRVAMAIGKCSDDTDIDQERVTIRFGEVEVYPP------DDALRAAVAEHLRGDEVVIGIDLAIADGAFTVYGCDLTEGYVRLNSE--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VZ6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170627 for 3331 contacts (-51.2/contact) +
2D Compatibility (PS) -40770 + (NN) -21457 + (LL) 2020
1D Compatibility (HY) -24000 + (ID) 6600
Total energy: -261434.0 ( -78.49 by residue)
QMean score : 0.443
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