Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTSGHQFKRFTMIIIVLIIAIAAAVFFFWQVDAEEQAPKVSKTELIESNKVWINNQMQIPIQDKIILSIPATNTNTTIASNGDLILETTNEEILKELASSDNRYKDIKAYRLRIEAKKVSEYITNTKYRYPTTTIQKKFANYEITSGERSVQTEKTPVQIEETTNNDIKVSLNTSYSSD---DAEVAADIFNSQIPEETTITDNTKNLITNKNVTIYPKTFVYDFTLQKNTMLVFKEQEEAVIKEPIGIEYIIK |
3LDW Chain:D ((186-253)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------DATLKTIIGQHLDTNIFSDKYS--HREIDVNNINVPEQPVIDINMINFGVYKNIVIH-KTAYYSFFL--------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 10418 for 312 contacts (33.4/contact) +
2D Compatibility (PS) -6131 + (NN) 561 + (LL) 16380
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: 17378.0 ( 55.70 by residue)
QMean score : -0.143
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