Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-MKKLIIAALGLTLVLSGCAPKLDSNDKVVQKDDSKAETGIMTKNQISSNYYKTVLPYKASKSRGLVVSNIYSRYDINELESGLMRVSQNKYSPDNYLFQEGQYLDKETLEKWLDRKSDKNPNGLNPASNGNGENRKPIYLAHILEQDYLKQTDKDTVALGGISIALAMNSVDYYQKEKYGDTYEQPISDS---ELLAQGKEMSATVLNRIRQTKGLENVPVTIAIYKQGARDAVAPGNYIAYATANGDSLSNWKDIDEKNYVLPSTESAKDHKTDNDNFLNFKKAIEDYYPNFTGVVGRGRYEDGQLAELNIDIPLQFYGEAEIIGFTQYVTDLVGQHIPKTADLQVNISTSDGPAALITRKANEDAATAHIYD---
1NVM Chain:B ((1-312))MNQKLKVAIIG----------------------SGNIGTDLMIKVLRNAKYLEMGAMV--GIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIG----PYCVPVVNLEEHLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLS-----------AAADQAAVAASVAEMVQAVQAYVPGYRLKQQVQFDVIPESAPLNIPGL---GRFSGLKTSVFLEVEGA--------------AHYLPAYA----------GNLDIMTSAALATAERMAQSMLNA


General information:
TITO was launched using:
RESULT:

Template: 1NVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 53544 for 2821 contacts (19.0/contact) +
2D Compatibility (PS) -32454 + (NN) -10052 + (LL) 3764
1D Compatibility (HY) -800 + (ID) 2300
Total energy: 11702.0 ( 4.15 by residue)
QMean score : 0.144

(partial model without unconserved sides chains):
PDB file : Tito_1NVM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NVM-query.scw
PDB file : Tito_Scwrl_1NVM.pdb: