Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -MKKLIIAALGLTLVLSGCAPKLDSNDKVVQKDDSKAETGIMTKNQISSNYYKTVLPYKASKSRGLVVSNIYSRYDINELESGLMRVSQNKYSPDNYLFQEGQYLDKETLEKWLDRKSDKNPNGLNPASNGNGENRKPIYLAHILEQDYLKQTDKDTVALGGISIALAMNSVDYYQKEKYGDTYEQPISDS---ELLAQGKEMSATVLNRIRQTKGLENVPVTIAIYKQGARDAVAPGNYIAYATANGDSLSNWKDIDEKNYVLPSTESAKDHKTDNDNFLNFKKAIEDYYPNFTGVVGRGRYEDGQLAELNIDIPLQFYGEAEIIGFTQYVTDLVGQHIPKTADLQVNISTSDGPAALITRKANEDAATAHIYD--- |
1NVM Chain:B ((1-312)) | MNQKLKVAIIG----------------------SGNIGTDLMIKVLRNAKYLEMGAMV--GIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIG----PYCVPVVNLEEHLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLS-----------AAADQAAVAASVAEMVQAVQAYVPGYRLKQQVQFDVIPESAPLNIPGL---GRFSGLKTSVFLEVEGA--------------AHYLPAYA----------GNLDIMTSAALATAERMAQSMLNA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 53544 for 2821 contacts (19.0/contact) +
2D Compatibility (PS) -32454 + (NN) -10052 + (LL) 3764
1D Compatibility (HY) -800 + (ID) 2300
Total energy: 11702.0 ( 4.15 by residue)
QMean score : 0.144
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