Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEELLKRFTKYVKVDTQSNEESTVCPTTPGQMELANILVTELKEIGMQEVTVD-----EFGYVMATLPSNSTKEVPVIGFLAHLDTATDLTGKNVQPQVHENYDGKDIILNKDLNVVLSPKQFPELAGYKGKTLITTDGTTLLGADDKAGITEIMVAMNHLINHPEIKHGKIRIAFTPDEEIGR-GPERFDVEAF-GAKYAYTMDGGPL--GELEYESFNAASAKITFKGNSVHPGTAKNKMVNAVKMAMEFDARIPKDEAPEYTEGYEGFYHLISLNG------DVEQARSYYIIRDFDHLKFVERKTHIASIAKELEEKYGEGSVELKLNDQYYNMREKIEPVKEIVDIVSAAMRNL-DIEPKISPIRGGTDGAQLSYKGLPTP-NIFGGGENFHG-KFEYVALESMVKATEVIIEVARLFEEKE |
1CG2 Chain:A ((18-392)) | -QPAVIKTLEKLVNIETGTGDA-------EGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGR---GGKNLLLMSHMDTVYLK--GIL---AKAPFRV-------------------------EGDKAYGPG----IADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQEEAKLADYVLSFEPTSAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDKA----KNLRFNWTIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKL-P-EADVKVIVTRGRPAFNA-GEGGKKLVDKAVAYYKEAGGTLGVEERTGGGTDAAYAALSGKPVIESLGLPGFGYHSDKAEYVDISAIPRRLYMAARLIMDLGAG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CG2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46830 for 3074 contacts (-15.2/contact) +
2D Compatibility (PS) -38046 + (NN) -12876 + (LL) 2656
1D Compatibility (HY) -400 + (ID) 3400
Total energy: -98896.0 ( -32.17 by residue)
QMean score : 0.487
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