Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQIELDL---PAYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGLGIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYV-KNLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL
3G4T Chain:B ((4-251))
LKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSD-PGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMGSDHCPI------
General information:
TITO was launched using:
RESULT:
Template:
3G4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113758 for 1975 contacts (-57.6/contact) +
2D Compatibility (PS) -26639 + (NN) -13532 + (LL) 832
1D Compatibility (HY) -22800 + (ID) 5800
Total energy: -181697.0 ( -92.00 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3G4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G4T-query.scw
PDB file :
Tito_Scwrl_3G4T.pdb
: