Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKIVLLLALITVVLTVGACSDNKKETEEKANKTEEESATFLTTISTKDFK-QKMADKTTGFVYVGRPTCEDCQAFQPILKKELKKRQPDQKMAYYNTDKASEKSRDNMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE
3DXB Chain:A ((10-119))
-------------------------------------MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP--------GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAG---
General information:
TITO was launched using:
RESULT:
Template:
3DXB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35352 for 779 contacts (-45.4/contact) +
2D Compatibility (PS) -12011 + (NN) -9161 + (LL) 4296
1D Compatibility (HY) -6800 + (ID) 1050
Total energy: -60078.0 ( -77.12 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_3DXB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DXB-query.scw
PDB file :
Tito_Scwrl_3DXB.pdb
: