Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MENRISGTTRLLGLIGTPIDHSKSPIMYNYSFQKAGLDYAYLAFDTPIQKVADTIKAIKTFNLRGANVTMPCKSEVLKHMDDLSPAARMIGAVNTIVN-EDGKLTGHITDGLGFIANLRDASVDVAGKKMTIIGAGGAATAIQVQ-CALDGAKEITIFNIKDAFYDKAKQTVASIKQEVPNCIVHIYDLNDTEKLNAEITTSDILVNATLVGMHPNEHETPISDTSVFRKELIVADIIYNPKKTQLLLDAEAAGCK-TVGGLGMLLWQGAEAYKLFTGKDMPVSEVKDLYFN |
1NYT Chain:B ((6-254)) | -------------VFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTIT------------NRTV-SRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGI---SGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHG-------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1NYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -99106 for 2086 contacts (-47.5/contact) +
2D Compatibility (PS) -25895 + (NN) -2335 + (LL) 2460
1D Compatibility (HY) -14400 + (ID) 4200
Total energy: -143476.0 ( -68.78 by residue)
QMean score : 0.435
|
|
|