Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LDEKTKIYDITIIGGGPVGLFAAFYAGMRNASVKIIESLPQLGGQLSTLYPEKYIYDIPGYPSVRAQELVNNLIQQMKPFDPTVALEEAVQSVEKQVDGTFEIITK-KDTHYSKAIIITAGNGAFEPRRLDLPEAEQYEGTNIHYFINDL-SRFSGRRVAVCGGGDSAVDWALMLEKVASSVAIVHRRNAFRAHEHSVNN-LEKSSIAIKTPFIPTEVLGNGDKLTHITLQEVKGDTTETLEIDDFIINYGFVSSLGPIKNWGLELER-NSIVVNSKMETSIPGIYCAGDICTYDGKVKLIATGFGEAPTAVNNAMNFIDPKTRVQPMHSTSLFE |
3F8D Chain:A ((12-319)) | ---PGEKFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAG---IVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENR---EFVVKTKRKGEFKADSVILGIGV---KRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDK-VVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEK------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3F8D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -248279 for 2653 contacts (-93.6/contact) +
2D Compatibility (PS) -32271 + (NN) -9922 + (LL) 1272
1D Compatibility (HY) -18400 + (ID) 3850
Total energy: -311450.0 ( -117.40 by residue)
QMean score : 0.473
|
|
|