Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTANQMERKKVTIHITNVIRQMDAEEKSDMSVSGVFYRDKGNRYLHYEEKQLAGTIRTVLKIADNELLLMRSGAVNMRMHFFRDNRRSTASVDSGAGKLQLESELVSMEELYENKPDVLSEVAFQYDLLSHGEYIGSYTVLMKIEEDAE
1RKI Chain:A ((1-101))
-----MKKHIIIKTIPKKEEIISRDLCDCI-----YYYDNSVICKPIGP----SKVYVSTSLENLEKCL--------QLHYFKKLVKNIEIFD----------------EVHNSKPN---------CDKCLIVEIGGVYFVRRVNGVP-
General information:
TITO was launched using:
RESULT:
Template:
1RKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12728 for 709 contacts (18.0/contact) +
2D Compatibility (PS) -11085 + (NN) -3284 + (LL) 4044
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -2697.0 ( -3.80 by residue)
QMean score : 0.023
(partial model without unconserved sides chains):
PDB file :
Tito_1RKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RKI-query.scw
PDB file :
Tito_Scwrl_1RKI.pdb
: