Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIKAKDTQDIRHRVLRPEQ--PEENA--IYPNDDMEGTFHLGAFEKDVLLGVASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLAEGEAEIWTRGADIIWCNA---RIVAVGFYEKHGYRKVGKS-----------FVIPGIGEHYLMKKVNPNKKVDQDN
1MK4 Chain:A ((1-156))
MDIRTITSSDYEMVTSVLNEWWGGRQLKEKLPRLFFEHFQD-TSFITSEHNSMTGFLIGFQSQS----DPETAYIHFSGVHPDFRKMQIGKQLYDVFIETVKQRGCTRVKCVTSPVNKVSIAYHTKLGFDIEKGTKTVNGISVFANYDGPGQD-RVLFVKNI---------
General information:
TITO was launched using:
RESULT:
Template:
1MK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31444 for 945 contacts (-33.3/contact) +
2D Compatibility (PS) -14574 + (NN) -3925 + (LL) 800
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -52993.0 ( -56.08 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_1MK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MK4-query.scw
PDB file :
Tito_Scwrl_1MK4.pdb
: