Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVNNQYDSMFQTQVDTISG-----MH---------WDMKKRQISPQAAGKMMEAIYYQN-------GDIVNYLSKTDFDNTRIPKNIP--VKVAHKIGDA--YDYKHDAAIVYA-EQ-PFIMIIFTDKSS------YDDITKIADDVYQVLK |
| 3DW0 Chain:A ((31-291)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPFAKLEQD--FGGSIGVYAMDTGSGATVSYRAEERFPLCSSFKGFLAAAVLARSQQQAGLLDTPIRYGKNAL-------VPWSPIS-EKYLTTGMTVAELSAAAVQYSDNAAANLLLKELGGP--AGLTAFMRSIGDTTFRLDRWELELNSAIPGDARDTSSPRAVTESLQKLTLGSALAAPQRQQFVDWLKGNTTGNHRIRAAVPADWAVGDKTGTCGVYGTANDYAVVWPTGRAPIVLAVYTRAPNKDDKHSEAVIAAAARLALEGLG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DW0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -94481 for 1937 contacts (-48.8/contact) +
2D Compatibility (PS) -24064 + (NN) -7526 + (LL) 13916
1D Compatibility (HY) -2400 + (ID) 2200
Total energy: -116755.0 ( -60.28 by residue)
QMean score : 0.419
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