Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSIKKSVIGFCLGAAALSMFACVDSSQSVMAAEKDKVEITWWAFPTFTQEKAKDGVGTYEKKVIKAFEKKNPNIKVKLETIDFTSGPEKITTAIEAGTAPDVLFDAPGRIIQYGKNGKLADLNDLFTDQFIKDVNNKNIIQASKSGDKAYMYPISSAPFYMAFNKKMLKDAGVLKLVKEGWTTSDFEKVLKALKNKGYTPGSFFANGQG-GDQGPRAFFANLYSAPITDKEV-----TKYTTDTKNSVKSMKKIVEWIKKGYLMNGSQYDGSADIQNFANGQTAFTILWAPAQPKTQAKLLESSKVDYLEVPFPSED-GKP-DLEYLVNGFAVFNNKDENKVKASKKFITF-IADDKKWGPKDVIRTGAFPVRTSFGDLYKGDK-RMMKISKWTQYYSPYYNTIDGFSEMRTLWFPMVQSVSNGDEKPADALKDFTQKANDTIKKAAK |
| 2GHA Chain:A ((3-374)) | ------------------------------------PKLTIWCSEK---Q------VDILQKLGEEFKAKY-GVEVEVQYVNFQDIKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLIEPIPNFSD---LKNFYETALNAF-SYGGKLYGIPYAMEAIALIYNKDYVPE------PPK--TMDELIEIAKQIDEEFGG--EVRGFITSAAEFYYIAPFIFGYGGYVFKQTEKGLDVNDIGLANEGAIKGVKLLKRLVDEGILDPSD--NYQIMDSMFREGQAAMIINGPWAIKAYKD-----AGIDYGVAPIPDLEPGVPARPFVGVQGFMVNAK--SPNKLLAIEFLTSFIAKKETM-YRIYLGDPRLPSRKDVLELVKDNPDVVGFTLS-A-ANGIPMPNVPQMAAVWAAMNDALNLVVNGKATVEEALKNAVERIKAQIQ---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GHA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -35151 for 3185 contacts (-11.0/contact) +
2D Compatibility (PS) -38509 + (NN) -14928 + (LL) 5008
1D Compatibility (HY) -15200 + (ID) 3100
Total energy: -101880.0 ( -31.99 by residue)
QMean score : 0.403
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