Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
4TYQ Chain:A ((1-212))
MNIVLMGLPGAGKGTQAERIVAKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSD-CERGFLLDGFPRTVAQAEALEEILEEMGRKLEYVIHIEVRQEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVAKRLEVNMKQMAPLLAFYDSKEVLVNVNGQQDMEKVFKDLREILQGL-
General information:
TITO was launched using:
RESULT:
Template:
4TYQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71953 for 1597 contacts (-45.1/contact) +
2D Compatibility (PS) -22611 + (NN) -10174 + (LL) 380
1D Compatibility (HY) -22000 + (ID) 5750
Total energy: -132108.0 ( -82.72 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_4TYQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TYQ-query.scw
PDB file :
Tito_Scwrl_4TYQ.pdb
: