Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------------------MSEINEKVEPQ---PIDLGEYKFGFHDDVKPIYSTGKGLNEAVIRELSAAKGEPEWMLDFRLKSLETFNKMPMQTWGADLSD---------IDFDDIIYYQKASDKPARDWDDVPEKIKETFE--RIGI-PEAERAYLAGASAQYESEVVYHNMKEEYDKLGIVFTDTDSALKEYPELFKKYFAKLVPPTDNKLAALNSAVWSGGTFIYVPKGVKVDIPLQTYFRINNENTGQFERTLIIVDEGASVHYVEGCTAPTYSSNSLHAAIVEIFALDGAYMRYTTIQNWSDN---VYNLVTKRATAKKDATVEWIDGNLGAKTTMKYPSVYLDGEGACGTMLSIAFANKGQHQDTGAKMIHNAPHTSSSIVSKSIAKGGGKVDYRGQVTFNKDSKKSVSHIECDTILMDDISKSDTIPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLSEAEATEMIVMGFVEPFTKELPMEYAVELNRLISYEMEGSVG |
2VGQ Chain:A ((17-477)) | IEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPD-KLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDN--AGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTIN------GPWA--WSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGR---------------QTVDEALKDAQTNSAMAFAEDKTYKYICRNFSNFCNVDVVEILPY-------LPCLT-ARDQDRLRATCTLSG-NRDTLWHLFNTLQRRP--------GWVEYFIAALRGCELVDLADEVASVYQ---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VGQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -58083 for 3437 contacts (-16.9/contact) +
2D Compatibility (PS) -44077 + (NN) -1296 + (LL) 2576
1D Compatibility (HY) -5600 + (ID) 2850
Total energy: -109330.0 ( -31.81 by residue)
QMean score : 0.231
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