Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKEVVVESFELDHTIVKAPYVRLISEEVGPVGDIITNFDIRLIQPNENAIDTAGLHTIEHLLAKLIRQRIN-GLIDCSPFGCR---TGFHMIMWGKQDATEIAKVIKSSLEAIAGGVTWEDVPGTTIESCGNYKDHSLHSAQEWAKLILSQGISDNAFERHIV
2E1B Chain:A ((95-156))
----------------------------------------------------LMRIHTGLHLLEHVLNEVLGEGN--WQLVGSGMSVEKGRYDIAYPENLNKYKEQIISLFNKYVDEGGEVKIWWEGDRRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSSI
General information:
TITO was launched using:
RESULT:
Template:
2E1B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40282 for 311 contacts (-129.5/contact) +
2D Compatibility (PS) -6284 + (NN) -4148 + (LL) 4188
1D Compatibility (HY) -2800 + (ID) 450
Total energy: -49776.0 ( -160.05 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_2E1B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E1B-query.scw
PDB file :
Tito_Scwrl_2E1B.pdb
: