Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYLTFKHVDFKTDDKLVLNDINFAIDEGDFVSIVGPSGSGKSTVLKLASGLMSPTAGHIFFDGKDLNQLEPIESRKMISYCFQT----PHLFGNTVEDNISFPYHIRHEK--VDYRRVDDLFQRFEMDQSYLKQDVKKLSGGEKQRIALIRQLLFEPKVLLLDEVTSALDNHNKAIVEKVIKSLHDK-GITILWITHDEEQSRRFANKVLKVVNGSIEAMEVIK
2R6G Chain:B ((2-212))
-ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE--RGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL
General information:
TITO was launched using:
RESULT:
Template:
2R6G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127974 for 1609 contacts (-79.5/contact) +
2D Compatibility (PS) -22274 + (NN) -9146 + (LL) 132
1D Compatibility (HY) -16800 + (ID) 3650
Total energy: -179712.0 ( -111.69 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_2R6G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R6G-query.scw
PDB file :
Tito_Scwrl_2R6G.pdb
: