Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQTKKEFILGLTIIITLTLLIMLIFLVMFNKSSNSKLKQTKDRRVLSTSTTRTSSSSHDQKIVEKSLEKKKMVMEQDMELMNAYRLYYDYAHLSLKEVVLAYMSEYGIEKNSVAFSYKNLKTGQRDAMNDTQAMTAGSTYKLPLNMLVVDAVVKGKLSMEERFDITETDYE-YIGEHNNYVAAFSGAMSIDDMQKYSLVYSENTPAYALAERIGGMDSAYSKFGRYGQSKGDIKNIQ---------KNGNKVTTDYYIQVLDYLWKHR----KKYDSLITYLEEAFP-TDYYRALIPSDVVVAQKPGYVR--EALNVGAIVK-EE--VPYIVAIYTAGLGGSTQEDSEINGVGLYQLEQLCFVINQWHRVNMN |
| 1GHP Chain:A ((2-257)) | -------------------------------------------------------------------------------------------------KELNDLEKKY---NAHIGVYALDTKSGKEVKFNSDKRFAYASTSKAINSAILLEQVPYNK--LNKKVHINKDDIVAYSPILEKY--V-GKDITLKALIEASMTYSDNTANNKIIKEIGGIKKVKQRLKELGDKVTNPVRYDIELQYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKFLLDLMLNNKSGDTLIKDGVPKDYKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTNKDNKSDKPNDKL----ISETAKSVMKEF-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GHP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96178 for 2050 contacts (-46.9/contact) +
2D Compatibility (PS) -24649 + (NN) 709 + (LL) 10112
1D Compatibility (HY) -6400 + (ID) 1950
Total energy: -118356.0 ( -57.73 by residue)
QMean score : 0.328
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