Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGNIELKKLAVKASENAYVPYSKFPVGAALRTAEGKIFTGCNVENISYGLANCAERTAIFKAVSEGYK--DFSEIAIYGNTEEPISPCGACRQVMVEFFNKNAKVTLIAKNGKTVETTVGELLPYSFVDLK
3DMO Chain:B ((28-135))
-------------------PYSNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGETHGPIAPCGACRQVMIELGKPTLEVVLTNMQGDVRVTSAGDLLPDAF----
General information:
TITO was launched using:
RESULT:
Template:
3DMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54067 for 788 contacts (-68.6/contact) +
2D Compatibility (PS) -11608 + (NN) -3811 + (LL) 2068
1D Compatibility (HY) -10000 + (ID) 3000
Total energy: -80418.0 ( -102.05 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_3DMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DMO-query.scw
PDB file :
Tito_Scwrl_3DMO.pdb
: