Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTATKQHKKVILVGDGAVGSSYAFALVNQGIAQELGIIEIPALFDKAVGDAEDLSHALAFTSPKKIYAATYADCADADLVVITAGAPQKPGETRLDLVGKNLAINKSIVTQVVESGFNGIFLVAANPVDVLTYSTWKFSGFPKERVIGSGTSLDSARFRQALADKIGVDARSVHAYIMGEHGDSEFAVWSHANVAGVQLEQWLQENRDIDEQGLVDLFISVRDAAYSIINKKGATYYGIAVALARITKAILDDENAVLPLSVYQEGQYGDVKDVFIGQPAIVGAHGIVRPVNIPLNDAELQKMQASAEQLKDIIDEAWKNPEFQEASKN |
3VKU Chain:E ((7-317)) | ----KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI--FKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYG-LNDIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAF----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VKU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -218941 for 2707 contacts (-80.9/contact) +
2D Compatibility (PS) -33614 + (NN) -12822 + (LL) 788
1D Compatibility (HY) -38000 + (ID) 10550
Total energy: -313139.0 ( -115.68 by residue)
QMean score : 0.610
|
|
|