Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------MNIYDQLQAVEDRYEELGELLSDPD-------VVSDTKRFMELSREEANTRETVTAYREYKQVIQNISDAEEMIKDASGDAELEEMAKEEL-KESKAAKEEYEERLKILLLPKDPNDDKNIILEIRGAAGGDEAA---------------LFA---GDLLTMYQKYAET------QGWRFEVMES-SVNGVGGIKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVE---YEIDQKDLRVDI-----YHASGAGGQNVNKVATAVRMVHIPTGIKVEMQEERTQQ--------------KNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQNRVTDHRIGLT-----------------LQKLDTILSG-----KMDEVIDALVMYDQTQKLEALNK |
| 5A1F Chain:A ((1-458)) | SMFLPPPECPVFEPSWEEFADPFAFIHKIRPIAEQTGICKVRPPPDWQPPFACDVDKLHFTPRIQRLNELEAQTRVRDYT--LRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPVRDSPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEP--KTWYGVPGYAAEQLENVMKKLAPELFVSQPDLLHQLV-TIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQKDMAIMIEDEKALRETVRKLGVIDSERMDFELLPDDERQCVKCKTTCFMSAISCSCKPGLLVCLHHVKELCSCPPYKYKLRYRYTLDDLYPMMNALKLRAE |
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General information:
TITO was launched using:
| RESULT:
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Template: 5A1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 75928 for 2370 contacts (32.0/contact) +
2D Compatibility (PS) -37257 + (NN) 3503 + (LL) 840
1D Compatibility (HY) -10000 + (ID) 2750
Total energy: 30264.0 ( 12.77 by residue)
QMean score : 0.194
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