Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMDKSIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQR
3WG9 Chain:C ((10-209))
---------AVIRRLPRYHRYLEELLKNDVKRISSRELSEKMGVTASQIRQDLNNFGG------GYNVEELYNNLTKILGLDKTYNTIIIGAGNLGQAIANYTSFEKSGFNLKGIFDINPR-LFGLKIRD-VEVMDVETVEDFIARNKIDIGILCIPKDNAQYTADRLVRAGIKAIWNFLPIDLKVPDDVILENVHLSDSLFTVSYRLNEEE
General information:
TITO was launched using:
RESULT:
Template:
3WG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153977 for 1359 contacts (-113.3/contact) +
2D Compatibility (PS) -21233 + (NN) -9165 + (LL) 624
1D Compatibility (HY) -17600 + (ID) 3100
Total energy: -204451.0 ( -150.44 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_3WG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WG9-query.scw
PDB file :
Tito_Scwrl_3WG9.pdb
: