Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLNKMKARFLIGLGGFAVISFIIMIGYTIGSQSVTKQTEHQIQSEAKRLAVKEKQKEKENILSDQLVKEFLTQYYTKEKLGENNHRIKPYMTDSAYSEEVAHQEESINQVYKDYLLDYRFEKAETFVNTETNEALAEVSYQVTYVSDASGNQQKSTQTETKTVKLAYSKLSNKLLVNQITIWNGKLESLKENKTGSNSAIPNIQGTTTMETN |
1NYH Chain:A ((1271-1346)) | ----------------------------------LSFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENAR--SQISEKDAKINKLME---------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NYH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 17797 for 302 contacts (58.9/contact) +
2D Compatibility (PS) -8346 + (NN) -2712 + (LL) 9432
1D Compatibility (HY) -3600 + (ID) 650
Total energy: 11921.0 ( 39.47 by residue)
QMean score : 0.498
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