Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTIYNFSAGPAVLPKPVLVKAQSELLNYQGSSMSVLEVSHRSKEFDDIIKGAERYLRDLMGIPDNYKVIFLQGGASLQFSMIPLNIARG-RKAYYHVAGSWGKKAYTEAVKLSK-TIPFEPILLASSEESVYDYIPEFDEK--E-IDPEAAYVHVTTNNTIEGTSLYDIPKT-NGVPVIADMSSNILAVKYKVEDFAMIYAGAQKNIGPAGVTVVIIREDMINEEP-TLSSMLDYKIQSDASSLYNTPPAYSIYIAKLVFEWVKSLGGVDAMEKANREKSGLLYDYIDSSE--FYSNPVRDKKSRSLCNIPFITINKDLD-EKFVKEATERGFKNIKGHRSVGGMRASLYNAFPKQGVIELIDFMKTFEAENA |
| 2C0R Chain:A ((4-362)) | -RAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAA-----SS----EASNYMTLPKLQEIQLQDNAAYLHLTSNETIEGAQFK-AFPDTGSVPLIGDMSSDILSRPFDLNQFGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRG--CVDVDSRSDMNITFRLAS-EELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKRSRG |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2C0R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -180319 for 3040 contacts (-59.3/contact) +
2D Compatibility (PS) -37746 + (NN) -13330 + (LL) 648
1D Compatibility (HY) -30000 + (ID) 7500
Total energy: -268247.0 ( -88.24 by residue)
QMean score : 0.498
|
|
|