Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVLILGGAGYIGSHMVDQLITQGKEKVIVVDNLVTGHRQAVH-------SDAIFYEGDLSDKTFMRQVFRENPDVDAVIHFAAFSLVAESMENPLKYFDNNTAGMIKLLEVMNECDIKNIVFSSTAATYG----IPEQVPILETAPQNPINPYGESKLMMETIM------------KWADQAYGIKF--VALRYFNVAGDKPDGSIGEDHKPETH-LLPIILQVAQGVRDKIMIFGDDYNTPDGTNVRDYVHPFDLADAHILAVDYLRQGNES-NVFNLGSSTGFSNLQMLEAARRITGKEIPAQKAARRPGDPDTLIASSEKARQILGWEPKFDNIDKIISSAWAWHSSHPNGYED |
4LIS Chain:A ((5-358)) | -SVLVTGGTGYIGSFTTLALLEAGY-KVVVADNLYNSSAEALNRIELISGKKAEFAQLDVTDEAAFDKVFEAHPDIDSVIHFAALKAVGESGEKPLDYYHVNVYGTICLLRSMVRHNVTNIVFSSSATVYGDATRFPDMIPIPEHCPLGPTNPYGNTKFAIELAITDVINAQRNNAKKAGNETEAAKWNGALLRYFNPAGAHPSGIMGEDPQGVPYNLLPLLAQVATGKREKLLVFGDDYASHDGTAIRDYIHILDLADGHLKALNYLRANNPGVRAWNLGTGRGSTVYEMIRAFSKAVGRDLPYEVAPRRAGDVLNLTSNPTRANTELGWKAQ-RTLEQACEDLWLWTKNNPQGYRQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LIS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158689 for 2763 contacts (-57.4/contact) +
2D Compatibility (PS) -35436 + (NN) -14998 + (LL) 444
1D Compatibility (HY) -20400 + (ID) 6750
Total energy: -235829.0 ( -85.35 by residue)
QMean score : 0.554
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