Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNYSGEVGLQYHLQIRPGDV--GRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFY-GQHEPERMP--VSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLIENDKSQ
4JP5 Chain:F ((7-253))
-----------FHLGLTKNDLQGATLAIVPGDPQRVEKIAKLMDNPVHLASHREFTSWRAELDGKAVIVCSTGIGGPSTSIAVEELAQLGVRTFLRIGTTGAIQPHINVGDVLVTTAAVRLDGASLHFAPMEFPAVADFSCTTALVNAAKSVGATTHIGITASSDTFYPGQERYDTFSGRVVRHFKGSMEEWQSMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQ-----------TESHAVKIVVEAARHLL------
General information:
TITO was launched using:
RESULT:
Template:
4JP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114464 for 2041 contacts (-56.1/contact) +
2D Compatibility (PS) -25462 + (NN) -19349 + (LL) 1040
1D Compatibility (HY) -17600 + (ID) 4900
Total energy: -180735.0 ( -88.55 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_4JP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JP5-query.scw
PDB file :
Tito_Scwrl_4JP5.pdb
: