Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRGGMGNMQKMMKQMQ-----KMQKDMAKAQEELAEKVVEGTAGGGMVTVKANGQKEILDVIIKEEVVDPEDIDMLQDLVLAATNEALKKVDEITNETMGQFTKGMNMPGLF-
1TDP Chain:A ((1-111))
MDIKSQTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPS--SMLTIYTQIQKDIKNGNIDTEKLRKYEIAKGLMSVPYIYF
General information:
TITO was launched using:
RESULT:
Template:
1TDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 16230 for 796 contacts (20.4/contact) +
2D Compatibility (PS) -11102 + (NN) -5510 + (LL) 128
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -5304.0 ( -6.66 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_1TDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TDP-query.scw
PDB file :
Tito_Scwrl_1TDP.pdb
: