Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEV--TDVRLRRVNTDGR---------------MRAIASITLDHEFVVHDIRVID----GNNGLFVAMPSK-------RTPDGEFRDITHPINSSTRGKIQDAVLNEYHRLGDTEALEFEEAGAS---------------
1SGO Chain:A ((1-139))
METDCNPMELSSMSGFEEGSELNGFEGTDMKDMRLEAEAVVNDVLFAVNNMFVSKSLRCADDVAYINVETKERNRYCLELTEAGLKVVGYA-FDQVDDHLQTPYHETVYSLLDTLSPAYREAFGNALLQRLEALKRDGQS
General information:
TITO was launched using:
RESULT:
Template:
1SGO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14841 for 530 contacts (-28.0/contact) +
2D Compatibility (PS) -10071 + (NN) -2505 + (LL) 204
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -31913.0 ( -60.21 by residue)
QMean score : 0.218
(partial model without unconserved sides chains):
PDB file :
Tito_1SGO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SGO-query.scw
PDB file :
Tito_Scwrl_1SGO.pdb
: