Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQHTIDQTQVIHTKPSALSYKEKTLVMGILNVTPDSFSDGGKYDSLDKALLHAKEMIDDGAHIIDIGGESTRPGAECVSEDEEMSRVIPVIERITKELGVPISVDTYKASVADEAVKAGASIINDIWGAKHDPKMASVAAEHNVPIVLMHNRPERNYNDLLPDMLSDLMESVKIAVEAGVDEKNIILDPGIGFAKTYHDNLAVMNKLEIFSGLGYPVLLATSRKRFIGRVLDLPPEERAEGTGATVCLGIQKGCDIVRVHDVKQIARMAKMMDAMLNKGGVHHG
3TYE Chain:B ((34-294))
------------------LNLNEKTLIMGILNV-------GGSYNEVDAAVRHAKEMRDEGAHIIDIGGEST-------SVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK------
General information:
TITO was launched using:
RESULT:
Template:
3TYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161892 for 2141 contacts (-75.6/contact) +
2D Compatibility (PS) -27359 + (NN) -17892 + (LL) 1404
1D Compatibility (HY) -30800 + (ID) 8250
Total energy: -244789.0 ( -114.33 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_3TYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TYE-query.scw
PDB file :
Tito_Scwrl_3TYE.pdb
: