Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEFDTIKDSKQLNGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRIVSAKSQAEILFFLQNQSFFTEEEEAVLKRGRNAKSGTTPKNTDVQTYRYSTAFEALLGYLFLEKKEERLSQLVAEAIQFGTSGRKTNESAT
1ZTD Chain:A ((5-92))
---------------KGLAKFGDSLINFLYSLALTEF-------LGKPTGDRVPNASLAIALELTGLSK--------NL-----------RRVDK---HAKGDYAEALIAKAWLMGL-ISEREAVEIIKKNLY----------
General information:
TITO was launched using:
RESULT:
Template:
1ZTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31664 for 568 contacts (-55.7/contact) +
2D Compatibility (PS) -9453 + (NN) -4484 + (LL) 2324
1D Compatibility (HY) -400 + (ID) 850
Total energy: -44527.0 ( -78.39 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_1ZTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZTD-query.scw
PDB file :
Tito_Scwrl_1ZTD.pdb
: