Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTPFERLALYDINASIKEGSYVAVIGHTGSGKSTLLQHLNGLLKPTKGQISLGSTVIQAGKKNKDLKKLRKKVGIVFQFPEHQLFEE-TVLKDISFGPMNFG-VKKEDAEQKAREMLQLVGLSEELLDRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPRGRKEIMDMFYELHQRGNLTTILVTHSMEDAAAYADEMIVMHKGTIQASGSPRDLFLKGEEMAGWGLDLPETIKFQRHLEAALGVRFNEPMLTIEDAAAEIRALFQGEKTL |
4U00 Chain:A ((19-231)) | --------VLKGIHLEVAPGEKLVIIGPSGSGKSTLIRTINRLEDFQEGEVVVDGLSV---KDDRALREIRREVGMVFQ--QFNLFPHMTVLENVTLAPMRVRRWPREKAEKKALELLERVGILDQA-RKYPAQLSGGQQQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLDVMRDLAQ-GGMTMVVVTHEMGFAREVADRVVFMDGGQIVEEGRPEEIFTRPKE-------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U00.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98205 for 1694 contacts (-58.0/contact) +
2D Compatibility (PS) -23769 + (NN) -17065 + (LL) 5360
1D Compatibility (HY) -19600 + (ID) 4050
Total energy: -157329.0 ( -92.87 by residue)
QMean score : 0.593
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