Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKTIFAFLTGLM--MFGTITAASASPDSKNQTAKKP---------KVQTGIDTLLPDYKKQLKGKRIGLITNPAGVNTSLKSSVDILYENPDIKLTALFGPEHGVRGDAQAGDEVGSYIDEKTGVPVYSLYGKTKKPTPEMLKNVDILMFDIQDVGTRFYTYIYTMAYAMEAAKENGIPFMVLDRP------NPQGGNHIEGPILEPEYASFVGLYPIPLKHGMTIGELASLFNKEFSIDADLTVVKMKHWKRKMDFDDTRLPFVLPSPNMPTVESTFVYPATGLIEGTNISEGRGTTKPFELIGAPFIKSTELEETLNSLHLPGVTFRAASFTP-TFSKHQGTLCHGVQLYVTDRDKFEAVKTG------LSVIKTIHDLYPEDFEFLSTGSFDKLAGNGWIR----TKIENGTSV--ENIINSYEKTL--QQFSKTRKKYLIY---------------------------------------------------- |
| 4D2I Chain:A ((1-476)) | ---MIIGYVIGQATTQEALILAERPVRLGTYVVLEYDNVKALGLITNVTRGSPLLDDNMNDIEIVQRLKQFNNS--IPVYTKAKVKLLCDMNNHFLMPDIPPFAGTPAREAEDEELKSIYSQDGQIRIGSLIGKN----VEVKLNINSFARHLAILAATGSGKSNTVAVLSQRISELGGSVLIFDYHGEYYDSDIKNLNRIE-PKLNPLY--------------MTPREFSTLLEIR-----ENAIIQYRILRRAFIKVTNGIRAALAAGQIP-----FSTLNSQFYELMADALKDEVLNKFEEFMDRYSNVIDLTSSDIIEKVKRGKVNVVSLTQLDEDSMDAVVSHYLRRILDSRKDFKRSKNSGLKFPIIAVIEEAHVFLSKNENTLTKYWASRIAREGRKFGVGLTIVSQRPKGLDENILSQMTNKIILKIIEPTDKKYILESSDNLSEDLAEQLSSLDVGEAIIIGKIVKLPAVVKIDMFEGKLLGSDPDMIG |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4D2I.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -16717 for 2688 contacts (-6.2/contact) +
2D Compatibility (PS) -38841 + (NN) -274 + (LL) 1532
1D Compatibility (HY) -12400 + (ID) 3350
Total energy: -70050.0 ( -26.06 by residue)
QMean score : 0.156
|
|
|