Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVNQNKKVLFLTDIENGLEPILQEATNTSAENMLTIQSYGASISHPYGEIMRSVIFAIYQEDVEEIFVVGTKDKKTSAGNGLTQLETMKDKIQTLDYLFQNCKPEFLGGTVDEWLN-ENSSDTIEKSVDMIRHHPLVPSYVKVRGLFVNHKGGKPSIAEVPDVKTGQAMPDHCLS
3LAS Chain:A ((27-166))
--LKPKTRVAIVTCMDSRLHVA--PALGLALGDAHILRNAGGRVT---DDVIRSLVISEQQLGTSEIVVLHHTDCGAQTFTNA----EFTEQLKR--D-LAV----DA--GDQDFLPFTDIEESVREDIALLKNSPLIPEDIIISGAIYDVDTGRVREVN----------------
General information:
TITO was launched using:
RESULT:
Template:
3LAS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46757 for 1021 contacts (-45.8/contact) +
2D Compatibility (PS) -14877 + (NN) -5074 + (LL) 1504
1D Compatibility (HY) -6400 + (ID) 900
Total energy: -72504.0 ( -71.01 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_3LAS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAS-query.scw
PDB file :
Tito_Scwrl_3LAS.pdb
: