Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNGDKLSLSVQNLANTNEITIVQAIGELKKSGK-------DAIPVLVEAL-KEE-GSLCNIAAAVLGEFGEDAS----EAAEELSCLLKSHAEDTRMAAAISLMRIGKP-------SLPFVIKIAQESEGQSCFWASWCIAWIDPSC--IEPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED
2DB0 Chain:A ((33-209))
------VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAV-EALVHLA---------
General information:
TITO was launched using:
RESULT:
Template:
2DB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87812 for 1127 contacts (-77.9/contact) +
2D Compatibility (PS) -16126 + (NN) -8608 + (LL) 528
1D Compatibility (HY) -6000 + (ID) 1350
Total energy: -119368.0 ( -105.92 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_2DB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DB0-query.scw
PDB file :
Tito_Scwrl_2DB0.pdb
: