Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLN-QS-QNDFTFPSD-TYLLLYFWSMSCPNCHQLTDKVL---QDIKDMNVKVIGVHVPYIEEEKSMEVVLTYALDRGLAIPIVLDQNYEIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL
2B5X Chain:A ((1-142))
MKLRQPMPELT--GEKAWLNGEVTREQL-IGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR-
General information:
TITO was launched using:
RESULT:
Template:
2B5X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108071 for 1040 contacts (-103.9/contact) +
2D Compatibility (PS) -14463 + (NN) -7347 + (LL) 260
1D Compatibility (HY) -3200 + (ID) 1400
Total energy: -134221.0 ( -129.06 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_2B5X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B5X-query.scw
PDB file :
Tito_Scwrl_2B5X.pdb
: