Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------MVKKWLIQFAVMLSVLSTFTYSASAVGVTAITGNNSFDTAMPIGYWKY-KNIDTTILEAGQDEAYFTFTANKGEKVYMRSTYQSAYTGMKIEIYDKNRIPVSQ-GTEVINPNTFSSFIYANADAQNT---------------TDTFYVKVSRG-----TYTGNMYFTLSI------EDRIKSGSGTFQFSGVAENKGNTSLS------------PSGSD------SSVIKVDLTNQSGIPRDAIVTRVQTTA-------------------TQTPSQG--NTRHLI--------MTSENNEWSRALVNSSTSG---------SYDI---SLSDQLSVAKVWSFKYNTLATARSTMSNVKAKIDYEYDVTKQF |
| 2VDU Chain:B ((2-436)) | SVIHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSK------RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF-VSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNLVTKKEEIYPLYNVSSL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -26496 for 1799 contacts (-14.7/contact) +
2D Compatibility (PS) -29810 + (NN) -9697 + (LL) 1128
1D Compatibility (HY) -8800 + (ID) 2750
Total energy: -76425.0 ( -42.48 by residue)
QMean score : 0.216
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