Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVTLGYLRESLSNHLENEVCQRICKKMLAKRYANEEEFVKDLDDNEMSFLNHVLEKEIKYA-QNEQDQKRAKELNEVYELLL
3MQM Chain:A ((2489-2539))
---------------------ITIEKQILTGYYKTVEAFDADML--------KVFRNAEKYYGRKSPVGRDVCRLRKAYY---
General information:
TITO was launched using:
RESULT:
Template:
3MQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5586 for 254 contacts (22.0/contact) +
2D Compatibility (PS) -5500 + (NN) -3315 + (LL) 2372
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -4257.0 ( -16.76 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_3MQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MQM-query.scw
PDB file :
Tito_Scwrl_3MQM.pdb
: