Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKFAVFASGNGSNFEAIVTRLKEENWDASAALLVCDKPQAKVIERAEAFHIPSFAFEPKSYENKAAFEQAIIEQLRLHEVELIALAGYMRLIGDTLLQAYGGKIINIHPSLLPAFPGIDAVGQAFRAGVKVAGITVHYVDEGMDTGPIIAQKAIEIDEHDTLETIEQRIHKLEHKWYPSVIKQLLGLNNRGEKA
3KCQ Chain:B ((10-185))--RVGVLISGRGSNLEALAKAFST---SVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPLDI-----EHISTVLREHDVDLVCLAGFMSILPEKFVTDWHHKIINIHPSLLPSFKGLNAQEQAYKAGVKIAGCTLHYVYQELDAGPIIMQAAVPVLREDTAESLASRILAAEHVCYPKGVK------------


General information:
TITO was launched using:
RESULT:

Template: 3KCQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 891 -155893 -174.96 -901.12
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain B : 0.81

3D Compatibility (PKB) : -174.96
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.575

(partial model without unconserved sides chains):
PDB file : Tito_3KCQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3KCQ-query.scw
PDB file : Tito_Scwrl_3KCQ.pdb: