Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKLLMLTTGGTIASVEGENGLAPG-VKADELLSYVSKLDN--DYTMETQSLM-NIDSTNMQPEYWVEIAEAVKENYDAYDGFVITHGTDTMAYTSAALSYMLQHAKKPIVITGSQIPITFQKTDAKKNITDAIRFACEG-VGGVYVVFDGRVIQGTRAIKLRTKSYDAFESINYPYIAFINEDGIEYNKQVTEPE-NDTFTVDTSLCTDVCLLKLHPGLKPEMFDALKSM-YKGIVIESYGSGGVPFEGRDILSKVNELIESGIVVVITTQCLEEGEDMSIYEVGRRVNQDLIIRSRNMNTEAIVPKLMWALGQSSDLPVVKRIMETPIADDVVL
2HIM Chain:A ((23-356))KKSIYVAYTGGTIGMQR-----IPVSGHLQRQLALMPEFHRPEMPDFTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNRTAKAHADGFDAFASPNLPPLLEAG-IHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIYPGISADVVRNFLRQPVKALILRSYGVGNAPQNK-AFLQELQEASDRGIVVVNLTQCMSGKVNMG-----NALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGELTP


General information:
TITO was launched using:
RESULT:

Template: 2HIM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1823 -8302 -4.55 -26.19
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -4.55
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.570

(partial model without unconserved sides chains):
PDB file : Tito_2HIM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2HIM-query.scw
PDB file : Tito_Scwrl_2HIM.pdb: