Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDDADLDLVRRTFAAFARGDLAELTQCFAPDVEQFVPGKHALAGVFRGVDNVVACLGDTAAAADGTMTVTLEDVLSNTDGQVIAVYRLRAS--RAGKVLDQREAILVTVAGGRITRLSEFYADPAATESFWA
1NWW Chain:A ((20-144))
-ASTPDEKIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPLPP----AYGRDAVEQTLAGLFTVMS-IDAVETFHIGSSN-GLVYTERVDVLRALPTGKSYNLSILGVFQLTEGKITGWRDYFDLREFEEAVD-
General information:
TITO was launched using:
RESULT:
Template:
1NWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71388 for 892 contacts (-80.0/contact) +
2D Compatibility (PS) -13348 + (NN) -4231 + (LL) 444
1D Compatibility (HY) -1600 + (ID) 1150
Total energy: -91273.0 ( -102.32 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_1NWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NWW-query.scw
PDB file :
Tito_Scwrl_1NWW.pdb
: