Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDECVVDAAAVVDALAGKGASAIVLRGLLKESISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLIEYTWQLRHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLVR------
1V8P Chain:A ((27-158))
AVEYLVDASALYALAAHYDKWIKHREKLAI------LHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSF-KVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTKGAIDVETLLVRLAAQ
General information:
TITO was launched using:
RESULT:
Template:
1V8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75654 for 975 contacts (-77.6/contact) +
2D Compatibility (PS) -14267 + (NN) -9511 + (LL) 240
1D Compatibility (HY) -3600 + (ID) 1400
Total energy: -104192.0 ( -106.86 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_1V8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8P-query.scw
PDB file :
Tito_Scwrl_1V8P.pdb
: