Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGWVAKIFRVGRVVEPAAPLPAAIAEPPAGVRGSLQIRHVDAGSCNGCEVEISGAFGPVY-DAE--RFGARLV------------ASP-------QHADALLVTGVVTHNM---------AGPLRKTLEATPRPRVVIACGDCALNRGVFADA--YGVVGAVGEVV---PVDVEIAGCPPTPAAIMAALRSVTGK
5ADU Chain:S ((4-165))
-------------------------------KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPPIPDVMSAIITYMVT-
General information:
TITO was launched using:
RESULT:
Template:
5ADU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81526 for 959 contacts (-85.0/contact) +
2D Compatibility (PS) -13193 + (NN) -301 + (LL) 2292
1D Compatibility (HY) -4400 + (ID) 1200
Total energy: -98328.0 ( -102.53 by residue)
QMean score : 0.387
(partial model without unconserved sides chains):
PDB file :
Tito_5ADU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5ADU-query.scw
PDB file :
Tito_Scwrl_5ADU.pdb
: