Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQARPARRADVRELSRTMARAFYDDPVMSWLLSNDNARTARLTRLFATIVRHQHLAGGGVEVARGAAGIGGAALWDPPDRWRESRRQQLAMTPGFLRVFGFRTAKARAALDVMMRVHPEEPHWYLAAIGSDPTVRGQGFGQVLMRSRLDRCDAE-HCPAYLESTKPENVPYYQRFGFRVTREIALPDAGPPLWAMWREPR
1KUX Chain:A ((33-181))
PANEFRCLTPEDAAGVFEIEREAFISVSGN---CPL---NLDEVQHFLT----L---CPELSLGWFVEGRLVAFIIGSLWDEERLTQ--------ES-----------------LALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAVRRAVLMCEDALVPFYQRFGFHPAGPCAI---------------
General information:
TITO was launched using:
RESULT:
Template:
1KUX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47086 for 1094 contacts (-43.0/contact) +
2D Compatibility (PS) -15199 + (NN) -4995 + (LL) 4184
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -68396.0 ( -62.52 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_1KUX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KUX-query.scw
PDB file :
Tito_Scwrl_1KUX.pdb
: