Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTELDDVSSLPSSRRTAGDTWAITESVGATA---LGVAAARAVETAATNPLIRDEFAKVLVSSAGTAWARLA----DADLAWLDGDQ---LGRRVHRVACDYQAVRTHFFDEYFG-AAVDAGVRQVVILAAGLDARAYRLNWPAGTVVYEIDQPSVLEY------KAGILQSHGAVPTA--RRHAVAVDLRDDWPAA---LIAAGFD-GTQPTAWLAEGLL--PYLPG--DAADRLFDMVTALSAPGSQVAVEAFTMNTKGNTQRWNRMRERLGLDID----VQALTYHEPDRSDA-AQWLATHGWQVHSVSNREEMARLGRAIPQDLVDETVRTTLLRGRLVTPAQPA |
| 4RKS Chain:A ((21-337)) | ----------------------TYRSIGSTAYPTIGVVLLGGIANPVTRTPLHTSAGIAYSDSCGSIRSETRIYADEATHIYFNGTESTDDNRSVRRVLDRY----SSVFEEAFGTKTVSYSSQNFGILSGSSDAGAASIGAAILGLKPDLDPHDVENDLRAVSESAGRSLFGGLTITWSDGFHAYTEKILDPEAFSGYSIVAFAFDYQRNPSDVIHQNIVRSDLYPARKKHADEHAHMIKEYAKTND---IKGIFDLAQEDTEEYHSILRGVGVNVIRENMQKLISYLKLIRKDYWNAYIVTGGSNVYVAVESENADRLFS--IENTFGSKKKMLRIVGGAWHRRPE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RKS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98694 for 2236 contacts (-44.1/contact) +
2D Compatibility (PS) -29878 + (NN) -5003 + (LL) 2508
1D Compatibility (HY) -6400 + (ID) 2750
Total energy: -140217.0 ( -62.71 by residue)
QMean score : 0.234
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