Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSAKAIDYRTRLSDFMTEHVFGAEADYDDYRRAAGPADHTAPPIIEELKTKAKDRGLWNLFLSAESGLTNLEYAPLAEMTGWSMEIAPEALNCAA-----PDTGNMEILHMFGTEQQRAQWLRPLLDGKIRSAFSMTEPAVASSDARNIETTISRDGADYVINGRKWWTSGAADPRCKILIVMGRTNPDAAAHQQQSMVLVPIDTPGVTIVRSTPVFGWQDRHGHCEIDYHNVRVPATNLLGEEGSGFAIAQARLGPGRIHHCMRALGAAERALALMVNRVRNRVAFGRPLAEQGVVQQAIAQSRNEIDQARLLCEKAAWTIDQHGNKEARHLVAMIKAVAPRVACDVIDRAIQVHGAAGVSDDTPLARLYGWHRAMRIFDGPDEVHLRSIARAELSREKSTFAAAVT |
4M9A Chain:B ((47-383)) | ---------------------------------------------DEVVAQMGELGFLGMIVPADWGGSYTDYVAYALAL---EEIAAGCASCATLVSVHNSVGCGPVLN-YGTTEQKERWLRDLASGKTVGAFSLTEPH-AGSEAHNLRTRAELRDGKWILNGSKQFVTNGA--RAGLAIVFAMTDPDEGKRGLSAFV-VPTDTPGFIVGKPEKKMGIRASD-TCPITLENCAIPQENLLGKRGEGLKIALSNLEGGRIGIAAQATGIARAAFDRARRYARERVQFGKPIAEHQAIAEKLANMATQINAARLLTHHAARL--RTAGLPCLSEASQAKLFASEMAEAVCSDAIQIHGGYGFLVDYEVERHYRDARITQIYEGTSEVQRMVIAR--------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4M9A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -181645 for 2954 contacts (-61.5/contact) +
2D Compatibility (PS) -36163 + (NN) -21776 + (LL) 4496
1D Compatibility (HY) -13200 + (ID) 5400
Total energy: -253688.0 ( -85.88 by residue)
QMean score : 0.496
|
|
|